Transcript: lnc-HDAC9-2:1

Basic information

LNCipedia transcript ID: lnc-HDAC9-2:1 
LNCipedia gene ID: lnc-HDAC9-2
Location (hg38): chr7:19112474-19114268
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1708 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012869
Alternative gene names: XLOC_006001; linc-ITGB8-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5907 non-coding 
CPAT coding probability 9.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC9-2:1 yes no no no

Available literature

  1. Li (2015), Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC9-1:1
3.1 lnc-HDAC9-2:1
4.0 lnc-HDAC9-2:1
4.1 lnc-HDAC9-2:1
5.0 lnc-HDAC9-2:1
5.1 lnc-AHR-19:1
5.2 lnc-HDAC9-2:1