Transcript: SMILR:9

Basic information

LNCipedia transcript ID: SMILR:9 
LNCipedia gene ID: SMILR
Ensembl Gene ID: ENSG00000254303
Ensembl Transcript ID: ENST00000523792
Location (hg38): chr8:121954640-122127184
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 790 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523792; ENST00000523792.1; RP11-398G24.2-001; OTTHUMT00000381218.1
Alternative gene names: ENSG00000254303; RP11-398G24.2; ENSG00000254303.1; OTTHUMG00000164967.1; AC037486.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4771 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMILR:9 no no no no

Available literature

  1. Ballantyne (2016), Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell Proliferation., Circulation


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAS2-3:1
3.1 lnc-HAS2-3:1
4.0 lnc-HAS2-3:1
4.1 lnc-RP11-973F15.1.1-5:3
5.0 lnc-RP11-973F15.1.1-5:3
5.1 SMILR:5
5.2 SMILR:9