Transcript: lnc-GRM6-1:1

Basic information

LNCipedia transcript ID: lnc-GRM6-1:1 
LNCipedia gene ID: lnc-GRM6-1
Location (hg38): chr5:178938677-178941083
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2287 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000513038; TCONS_00009823; NONHSAT105564
Alternative gene names: ENSG00000248595; XLOC_005104; linc-ZNF354A; AC104117.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0498 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRM6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRM6-1:1
3.1 lnc-GRM6-1:1
4.0 lnc-GRM6-1:1
4.1 lnc-GRM6-1:1
5.0 lnc-GRM6-1:1
5.1 lnc-MGAT4B-33:1
5.2 lnc-GRM6-1:1