Transcript: lnc-GNG11-3:2

Basic information

LNCipedia transcript ID: lnc-GNG11-3:2 
LNCipedia gene ID: lnc-GNG11-3
Ensembl Gene ID: ENSG00000236453
Ensembl Transcript ID: ENST00000438538
Location (hg38): chr7:94061141-94066661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 743 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438538; ENST00000438538.1; AC003092.1-002; OTTHUMT00000341546.1; NONHSAT122024
Alternative gene names: ENSG00000236453; AC003092.1; ENSG00000236453.1; OTTHUMG00000155746.2; ENSG00000236453.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -517.9211 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNG11-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNG11-1:2
3.1 lnc-GNG11-3:2
4.0 lnc-GNG11-3:2
4.1 lnc-GNG11-3:2
5.0 lnc-GNG11-3:2
5.1 lnc-LAMTOR4-92:12
5.2 lnc-GNG11-3:2