Transcript: lnc-GDF5-1:4

Basic information

LNCipedia transcript ID: lnc-GDF5-1:4 
LNCipedia gene ID: lnc-GDF5-1
Location (hg38): chr20:35476374-35481187
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 477 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000416903.1; RP3-477O4.14-003; OTTHUMT00000156150.1; NONHSAT079503
Alternative gene names: ENSG00000230155.1; RP3-477O4.14; OTTHUMG00000055986.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.5677 non-coding 
CPAT coding probability 6.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDF5-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GDF5-1:4
4.0 lnc-GDF5-1:4
4.1 lnc-GDF5-1:4
5.0 lnc-GDF5-1:4
5.1 lnc-EIF6-6:4
5.2 lnc-GDF5-1:4