Transcript: lnc-CASTOR2-3:1

Basic information

LNCipedia transcript ID: lnc-CASTOR2-3:1 
LNCipedia gene ID: lnc-CASTOR2-3
Location (hg38): chr7:74923722-74925797
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT121495; FPKM1_group_29901_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.605 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASTOR2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GATSL1-3:1
4.0 lnc-GATSL1-3:1
4.1 lnc-GATSL1-3:1
5.0 lnc-GATSL1-3:1
5.1 lnc-FKBP6-42:1
5.2 lnc-CASTOR2-3:1