Transcript: LINC01736:18

Basic information

LNCipedia transcript ID: LINC01736:18 
HGNC Gene Symbol: LINC01736    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1736
Ensembl Gene ID: ENSG00000228058
Ensembl Transcript ID: ENST00000445339
Location (hg38): chr1:230002730-230007162
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 654 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000414; ENST00000445339; ENST00000445339.1; RP11-552D4.1-001; OTTHUMT00000092103.1
Alternative gene names: XLOC_000604; linc-GALNT2; ENSG00000228058; RP11-552D4.1; ENSG00000228058.1; OTTHUMG00000037758.1; LINC01736


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.0249 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01736:18 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT2-2:2
3.1 lnc-GALNT2-2:2
4.0 lnc-GALNT2-2:2
4.1 lnc-GALNT2-2:2
5.0 lnc-GALNT2-2:2
5.1 LINC01736:9
5.2 LINC01736:18