Transcript: lnc-GADD45G-4:2

Basic information

LNCipedia transcript ID: lnc-GADD45G-4:2 
LNCipedia gene ID: lnc-GADD45G-4
Ensembl Gene ID: ENSG00000226206
Ensembl Transcript ID: ENST00000421297
Location (hg38): chr9:89799695-89821753
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 916 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015706; ENST00000421297; ENST00000421297.1; RP5-1050E16.2-001; OTTHUMT00000144686.1; NONHSAT132980
Alternative gene names: XLOC_007450; linc-SYK-3; ENSG00000226206; RP5-1050E16.2; ENSG00000226206.1; OTTHUMG00000067508.1; BX470209.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5803 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GADD45G-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GADD45G-4:2
3.1 lnc-GADD45G-4:2
4.0 lnc-GADD45G-4:2
4.1 lnc-GADD45G-4:2
5.0 lnc-GADD45G-4:2
5.1 lnc-SECISBP2-12:2
5.2 lnc-GADD45G-4:2