Transcript: lnc-NUDCD2-2:17

Basic information

LNCipedia transcript ID: lnc-NUDCD2-2:17 
LNCipedia gene ID: lnc-NUDCD2-2
Location (hg38): chr5:162424378-162427345
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000522274; ENST00000522274.1; RP11-96G10.1-001; OTTHUMT00000374095.1; NONHSAT104885
Alternative gene names: ENSG00000254173; RP11-96G10.1; ENSG00000254173.1; OTTHUMG00000163548.1; AC091996.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.224 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDCD2-2:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GABRB2-2:1
3.1 lnc-GABRB2-3:1
4.0 lnc-GABRB2-3:1
4.1 lnc-GABRB2-3:1
5.0 lnc-GABRB2-3:1
5.1 lnc-FAM71B-44:17
5.2 lnc-NUDCD2-2:17