Transcript: lnc-GABRB2-1:1

Basic information

LNCipedia transcript ID: lnc-GABRB2-1:1 
LNCipedia gene ID: lnc-GABRB2-1
Ensembl Gene ID: ENSG00000253403
Ensembl Transcript ID: ENST00000521984
Location (hg38): chr5:161687347-161689408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 449 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521984.1; RP11-348M17.2-001; OTTHUMT00000374399.1; NONHSAT104878
Alternative gene names: ENSG00000253403.1; RP11-348M17.2; OTTHUMG00000163585.1; AC091944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.7146 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABRB2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABRB2-1:1
4.0 lnc-GABRB2-1:1
4.1 lnc-GABRB2-1:1
5.0 lnc-GABRB2-1:1
5.1 lnc-FAM71B-42:1
5.2 lnc-GABRB2-1:1