Transcript: lnc-FGF9-3:2

Basic information

LNCipedia transcript ID: lnc-FGF9-3:2 
LNCipedia gene ID: lnc-FGF9-3
Location (hg38): chr13:22210285-22276518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2140 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: TCONS_00021479; ENST00000456886
Alternative gene names: XLOC_010302; linc-SGCG-7; ENSG00000231330; AL136962.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.7451 non-coding 
CPAT coding probability 9.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGF9-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGF9-3:2
3.1 lnc-FGF9-3:2
4.0 lnc-FGF9-3:2
4.1 lnc-FGF9-3:2
5.0 lnc-FGF9-3:2
5.1 lnc-GTF3A-103:14
5.2 lnc-FGF9-3:2