Transcript: lnc-FGF9-3:1

Basic information

LNCipedia transcript ID: lnc-FGF9-3:1 
LNCipedia gene ID: lnc-FGF9-3
Ensembl Gene ID: ENSG00000276476
Ensembl Transcript ID: ENST00000631321
Location (hg38): chr13:22040975-22276524
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2412 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413646; ENST00000631321.1
Alternative gene names: ENSG00000231330; AL136962.1; ENSG00000276476.2; LINC00540


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.1152 non-coding 
CPAT coding probability 9.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGF9-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGF9-3:1
3.1 lnc-FGF9-3:1
4.0 lnc-FGF9-3:1
4.1 lnc-FGF9-3:1
5.0 lnc-FGF9-3:1
5.1 lnc-GTF3A-103:2
5.2 lnc-FGF9-3:1