Transcript: lnc-FBXO11-1:1

Basic information

LNCipedia transcript ID: lnc-FBXO11-1:1 
LNCipedia gene ID: lnc-FBXO11-1
Ensembl Gene ID: ENSG00000230773
Ensembl Transcript ID: ENST00000447571
Location (hg38): chr2:47941696-48240983
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1808 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447571; ENST00000447571.1; AC079807.4-001; OTTHUMT00000323780.4; ENST00000447571.5
Alternative gene names: ENSG00000230773; AC079807.4; ENSG00000230773.1; OTTHUMG00000151756.4; ENSG00000230773.2; ENSG00000230773.6; AC092650.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.3623 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO11-1:1
3.1 lnc-FBXO11-1:1
4.0 lnc-FBXO11-1:1
4.1 lnc-FBXO11-1:1
5.0 lnc-FBXO11-1:1
5.1 lnc-CALM2-21:9
5.2 lnc-FBXO11-1:1