Transcript: lnc-BRINP3-4:1

Basic information

LNCipedia transcript ID: lnc-BRINP3-4:1 
LNCipedia gene ID: lnc-BRINP3-4
Ensembl Gene ID: ENSG00000237283
Ensembl Transcript ID: ENST00000432976
Location (hg38): chr1:188705623-188710880
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 733 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000701; ENST00000432976; ENST00000432976.1; RP11-316I3.1-001; OTTHUMT00000086293.1; NONHSAT008478
Alternative gene names: XLOC_001128; linc-PTGS2-1; ENSG00000237283; RP11-316I3.1; ENSG00000237283.1; OTTHUMG00000035544.1; AL691515.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.6191 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRINP3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM5C-4:1
3.1 lnc-FAM5C-4:1
4.0 lnc-FAM5C-4:1
4.1 lnc-FAM5C-4:1
5.0 lnc-FAM5C-4:1
5.1 lnc-MYOG-125:1
5.2 lnc-BRINP3-4:1