Transcript: lnc-FAM47B-1:2

Basic information

LNCipedia transcript ID: lnc-FAM47B-1:2 
LNCipedia gene ID: lnc-FAM47B-1
Ensembl Gene ID: ENSG00000233928
Ensembl Transcript ID: ENST00000445233
Location (hg38): chrX:33742118-33942235
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016975; ENST00000445233; ENST00000445233.1; RP11-305F18.1-002; OTTHUMT00000056204.1; NONHSAT136609
Alternative gene names: XLOC_007947; linc-FAM47B-2; ENSG00000233928; RP11-305F18.1; ENSG00000233928.1; OTTHUMG00000021338.1; ENSG00000233928.5; AL591501.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.6616 non-coding 
CPAT coding probability 5.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM47B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM47B-1:2
3.1 lnc-FAM47B-1:2
4.0 lnc-FAM47B-1:2
4.1 lnc-FAM47B-1:2
5.0 lnc-FAM47B-1:2
5.1 lnc-GK-14:9
5.2 lnc-FAM47B-1:2