Transcript: lnc-FAM43A-9:1

Basic information

LNCipedia transcript ID: lnc-FAM43A-9:1 
LNCipedia gene ID: lnc-FAM43A-9
Location (hg38): chr3:194961092-194965476
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 310 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006373; NONHSAT094135
Alternative gene names: XLOC_002989; linc-MUC20-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.2281 non-coding 
CPAT coding probability 9.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43A-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM43A-8:1
3.1 lnc-FAM43A-9:1
4.0 lnc-FAM43A-9:1
4.1 lnc-FAM43A-9:1
5.0 lnc-FAM43A-9:1
5.1 lnc-MUC20-22:1
5.2 lnc-FAM43A-9:1