Transcript: lnc-FAM135A-1:7

Basic information

LNCipedia transcript ID: lnc-FAM135A-1:7 
LNCipedia gene ID: lnc-FAM135A-1
Location (hg38): chr6:70394887-70399417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237643.1|ENST00000418403.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.3253 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM135A-1:7 no no no no

Available literature

  1. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  2. Gibb (2015), Activation of an endogenous retrovirus-associated long non-coding RNA in human adenocarcinoma., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM135A-1:7
5.0 lnc-FAM135A-1:7
5.1 lnc-CYB5R4-123:4
5.2 lnc-FAM135A-1:7