Transcript: lnc-PCED1B-2:6

Basic information

LNCipedia transcript ID: lnc-PCED1B-2:6 
LNCipedia gene ID: lnc-PCED1B-2
Location (hg38): chr12:46971124-46972224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 264 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020397; NONHSAT027894
Alternative gene names: XLOC_009726; linc-FAM113B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.8494 non-coding 
CPAT coding probability 4.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM113B-2:1
3.1 lnc-FAM113B-2:1
4.0 lnc-FAM113B-2:1
4.1 lnc-FAM113B-2:1
5.0 lnc-FAM113B-2:1
5.1 lnc-PCED1B-2:3
5.2 lnc-PCED1B-2:6