Transcript: lnc-ERRFI1-1:2

Basic information

LNCipedia transcript ID: lnc-ERRFI1-1:2 
LNCipedia gene ID: lnc-ERRFI1-1
Location (hg38): chr1:8002729-8007469
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2884 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001384; NONHSAT000730
Alternative gene names: XLOC_000695; linc-TNFRSF9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5392 non-coding 
CPAT coding probability 11.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERRFI1-1:2 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERRFI1-1:1
3.1 lnc-TNFRSF9-1:1
4.0 lnc-ERRFI1-1:2
4.1 lnc-ERRFI1-1:2
5.0 lnc-ERRFI1-1:2
5.1 lnc-CLSTN1-28:1
5.2 lnc-ERRFI1-1:2