Transcript: lnc-DHX38-3:6

Basic information

LNCipedia transcript ID: lnc-DHX38-3:6 
LNCipedia gene ID: lnc-DHX38-3
Ensembl Gene ID: ENSG00000260664
Ensembl Transcript ID: ENST00000564508
Location (hg38): chr16:72425948-72430266
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4319 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564508.2
Alternative gene names: ENSG00000260664.2; AC004158.3; AC004158.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.5701 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX38-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-DHX38-3:6
4.1 lnc-DHX38-3:6
5.0 lnc-DHX38-3:6
5.1 lnc-MARVELD3-30:6
5.2 lnc-DHX38-3:6