Transcript: lnc-DCAF5-1:3

Basic information

LNCipedia transcript ID: lnc-DCAF5-1:3 
LNCipedia gene ID: lnc-DCAF5-1
Ensembl Gene ID: ENSG00000258957
Ensembl Transcript ID: ENST00000556182
Location (hg38): chr14:69184074-69191420
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 553 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556182; ENST00000556182.1; RP11-363J20.1-003; OTTHUMT00000412986.1
Alternative gene names: ENSG00000258957; RP11-363J20.1; ENSG00000258957.1; OTTHUMG00000171321.1; AL359317.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2108 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DCAF5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCAF5-1:3
3.1 lnc-DCAF5-1:3
4.0 lnc-DCAF5-1:3
4.1 lnc-DCAF5-1:3
5.0 lnc-DCAF5-1:3
5.1 lnc-ABCD4-73:7
5.2 lnc-DCAF5-1:3