Transcript: lnc-DAP-1:1

Basic information

LNCipedia transcript ID: lnc-DAP-1:1 
LNCipedia gene ID: lnc-DAP-1
Ensembl Gene ID: ENSG00000250576
Ensembl Transcript ID: ENST00000503953
Location (hg38): chr5:10775058-10777062
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009605; ENST00000503953; ENST00000503953.1; CTD-2154B17.1-001; OTTHUMT00000367394.1; NONHSAT100489
Alternative gene names: XLOC_004735; linc-DAP; ENSG00000250576; CTD-2154B17.1; ENSG00000250576.1; OTTHUMG00000162122.1; AC012629.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.7496 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DAP-1:1
3.1 lnc-DAP-1:1
4.0 lnc-DAP-1:1
4.1 lnc-DAP-1:1
5.0 lnc-DAP-1:1
5.1 lnc-IRX2-151:1
5.2 lnc-DAP-1:1