Transcript: lnc-DAGLA-1:2

Basic information

LNCipedia transcript ID: lnc-DAGLA-1:2 
LNCipedia gene ID: lnc-DAGLA-1
Ensembl Gene ID: ENSG00000250230
Ensembl Transcript ID: ENST00000506329
Location (hg38): chr11:61588494-61607550
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2349 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506329; ENST00000506329.2; RP11-855O10.2-001; OTTHUMT00000398515.1; NONHSAT021689
Alternative gene names: ENSG00000250230; RP11-855O10.2; ENSG00000250230.2; OTTHUMG00000168159.1; AP002754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.5821 non-coding 
CPAT coding probability 5.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAGLA-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DAGLA-1:3
3.1 lnc-DAGLA-1:2
4.0 lnc-DAGLA-1:2
4.1 lnc-DAGLA-1:2
5.0 lnc-DAGLA-1:2
5.1 lnc-MS4A18-31:8
5.2 lnc-DAGLA-1:2