Transcript: LINC01959:4

Basic information

LNCipedia transcript ID: LINC01959:4 
HGNC Gene Symbol: LINC01959    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1959
Ensembl Gene ID: ENSG00000251045
Ensembl Transcript ID: ENST00000508452
Location (hg38): chr5:135648584-135653935
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2141 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508452; ENST00000508452.1; CTC-321K16.4-001; OTTHUMT00000371696.2; NONHSAT103920
Alternative gene names: ENSG00000251045; CTC-321K16.4; ENSG00000251045.1; OTTHUMG00000163111.2; LINC01959


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.3237 non-coding 
CPAT coding probability 12.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01959:4 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCL14-1:1
3.1 lnc-CXCL14-1:1
4.0 lnc-CXCL14-1:1
4.1 lnc-CXCL14-1:1
5.0 lnc-CXCL14-1:1
5.1 LINC01959:2
5.2 LINC01959:4