Transcript: LINC02108:3

Basic information

LNCipedia transcript ID: LINC02108:3 
HGNC Gene Symbol: LINC02108    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2108
Ensembl Gene ID: ENSG00000250127
Ensembl Transcript ID: ENST00000504333
RefSeq ID: NR_109904
Location (hg38): chr5:58541567-58558243
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1184 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109904; ENST00000504333.1; NR_109904.1
Alternative gene names: ENSG00000250127.1; CTD-2117L12.1; LINC02108; LOC101928600


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.2594 non-coding 
CPAT coding probability 23.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02108:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2117L12.1.1-2:1
4.0 lnc-CTD-2117L12.1.1-2:1
4.1 lnc-CTD-2117L12.1.1-2:1
5.0 lnc-CTD-2117L12.1.1-2:1
5.1 LINC02108:2
5.2 LINC02108:3