Transcript: LINC01948:10

Basic information

LNCipedia transcript ID: LINC01948:10 
HGNC Gene Symbol: LINC01948    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1948
Ensembl Gene ID: ENSG00000248727
Ensembl Transcript ID: ENST00000506836
RefSeq ID: NR_104664
Location (hg38): chr5:56457795-56481769
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 656 bp
Exons: 5
Sources: Broad Institute; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009668; NR_104664; ENST00000506836.5; NR_104664.1
Alternative gene names: XLOC_004829; linc-ANKRD55-6; ENSG00000248727.5; CTC-236F12.4; LINC01948; LOC102467147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.1607 non-coding 
CPAT coding probability 11.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01948:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTC-236F12.4.1-1:2
3.1 lnc-CTC-236F12.4.1-1:2
4.0 lnc-CTC-236F12.4.1-1:2
4.1 lnc-CTC-236F12.4.1-1:2
5.0 lnc-CTC-236F12.4.1-1:2
5.1 LINC01948:4
5.2 LINC01948:10