Transcript: lnc-COL4A1-2:10

Basic information

LNCipedia transcript ID: lnc-COL4A1-2:10 
LNCipedia gene ID: lnc-COL4A1-2
Ensembl Gene ID: ENSG00000275830
Ensembl Transcript ID: ENST00000617298
Location (hg38): chr13:110036197-110057286
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 936 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617298.1
Alternative gene names: ENSG00000275830.1; RP11-403A3.3; AL355974.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.4649 non-coding 
CPAT coding probability 31.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL4A1-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-COL4A1-2:10
4.1 lnc-COL4A1-2:10
5.0 lnc-COL4A1-2:10
5.1 lnc-COL4A1-2:10
5.2 lnc-COL4A1-2:10