Transcript: lnc-RIPOR2-3:1

Basic information

LNCipedia transcript ID: lnc-RIPOR2-3:1 
LNCipedia gene ID: lnc-RIPOR2-3
Location (hg38): chr6:25061625-25063507
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00011470; ENST00000424868; ENST00000424868.1; RP3-425P12.2-001; OTTHUMT00000040032.1; NONHSAT108134
Alternative gene names: XLOC_005643; linc-FAM65B-1; ENSG00000230372; RP3-425P12.2; ENSG00000230372.1; OTTHUMG00000014380.1; AL133268.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.8619 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIPOR2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMAHP-1:1
3.1 lnc-CMAHP-1:1
4.0 lnc-CMAHP-1:1
4.1 lnc-CMAHP-1:1
5.0 lnc-CMAHP-1:1
5.1 lnc-C6orf62-15:1
5.2 lnc-RIPOR2-3:1