Transcript: lnc-CDK2AP1-1:7

Basic information

LNCipedia transcript ID: lnc-CDK2AP1-1:7 
LNCipedia gene ID: lnc-CDK2AP1-1
Ensembl Gene ID: ENSG00000235423
Ensembl Transcript ID: ENST00000541002
Location (hg38): chr12:123252242-123261483
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1110 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT031572; ENST00000541002.3; ENST00000541002.7
Alternative gene names: ENSG00000235423.4; RP11-282O18.3; ENSG00000235423.8; AC068768.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8271 non-coding 
CPAT coding probability 11.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK2AP1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK2AP1-1:7
4.0 lnc-CDK2AP1-1:7
4.1 lnc-CDK2AP1-1:7
5.0 lnc-CDK2AP1-1:7
5.1 lnc-SBNO1-3:3
5.2 lnc-CDK2AP1-1:7