Transcript: lnc-CDK2AP1-1:4

Basic information

LNCipedia transcript ID: lnc-CDK2AP1-1:4 
LNCipedia gene ID: lnc-CDK2AP1-1
Ensembl Gene ID: ENSG00000235423
Ensembl Transcript ID: ENST00000543217
Location (hg38): chr12:123252030-123260447
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 793 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543217.2; RP11-282O18.3-002; OTTHUMT00000432797.1; NONHSAT140098; ENST00000543217.6
Alternative gene names: ENSG00000235423.3; RP11-282O18.3; OTTHUMG00000168853.2; ENSG00000235423.4; ENSG00000235423.8; AC068768.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2976 non-coding 
CPAT coding probability 12.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK2AP1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK2AP1-1:4
4.0 lnc-CDK2AP1-1:4
4.1 lnc-CDK2AP1-1:4
5.0 lnc-CDK2AP1-1:4
5.1 lnc-SBNO1-3:12
5.2 lnc-CDK2AP1-1:4