Transcript: lnc-CDK2AP1-1:1

Basic information

LNCipedia transcript ID: lnc-CDK2AP1-1:1 
LNCipedia gene ID: lnc-CDK2AP1-1
Location (hg38): chr12:123244187-123261483
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1163 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000541002.2; RP11-282O18.3-001; OTTHUMT00000401386.2; NONHSAT031571
Alternative gene names: ENSG00000235423.3; RP11-282O18.3; OTTHUMG00000168853.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.4073 non-coding 
CPAT coding probability 11.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDK2AP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK2AP1-1:1
4.0 lnc-CDK2AP1-1:1
4.1 lnc-CDK2AP1-1:1
5.0 lnc-CDK2AP1-1:1
5.1 lnc-SBNO1-3:2
5.2 lnc-CDK2AP1-1:1