Transcript: lnc-CDH5-4:2

Basic information

LNCipedia transcript ID: lnc-CDH5-4:2 
LNCipedia gene ID: lnc-CDH5-4
Location (hg38): chr16:65137663-65138821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 866 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024861; NONHSAT142969
Alternative gene names: XLOC_011753; linc-CDH5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.083 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH5-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH5-3:2
3.1 lnc-CDH5-4:2
4.0 lnc-CDH5-4:2
4.1 lnc-CDH5-4:2
5.0 lnc-CDH5-4:2
5.1 lnc-NOL3-54:6
5.2 lnc-CDH5-4:2