Transcript: lnc-CDH2-4:1

Basic information

LNCipedia transcript ID: lnc-CDH2-4:1 
LNCipedia gene ID: lnc-CDH2-4
Ensembl Gene ID: ENSG00000265980
Ensembl Transcript ID: ENST00000577674
Location (hg38): chr18:29278509-29361963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577674.1; CTD-2515C13.2-001; OTTHUMT00000446545.1; NONHSAT058796
Alternative gene names: ENSG00000265980.1; CTD-2515C13.2; OTTHUMG00000179468.1; AC074237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0108 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH2-4:1
4.0 lnc-CDH2-4:1
4.1 lnc-CDH2-4:1
5.0 lnc-CDH2-4:1
5.1 lnc-SMAD2-132:1
5.2 lnc-CDH2-4:1