Transcript: lnc-CDH18-2:2

Basic information

LNCipedia transcript ID: lnc-CDH18-2:2 
LNCipedia gene ID: lnc-CDH18-2
Ensembl Gene ID: ENSG00000251487
Ensembl Transcript ID: ENST00000513955
Location (hg38): chr5:19035197-19038740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 898 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513955; ENST00000513955.1; RP11-124N3.2-002; OTTHUMT00000366085.1; NONHSAT100688
Alternative gene names: ENSG00000251487; RP11-124N3.2; ENSG00000251487.1; OTTHUMG00000161783.1; AC106744.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.7846 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH18-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH18-2:2
3.1 lnc-CDH18-2:2
4.0 lnc-CDH18-2:2
4.1 lnc-CDH18-2:2
5.0 lnc-CDH18-2:2
5.1 lnc-CDH12-19:2
5.2 lnc-CDH18-2:2