Transcript: LINC02239:4

Basic information

LNCipedia transcript ID: LINC02239:4 
HGNC Gene Symbol: LINC02239    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2239
Ensembl Gene ID: ENSG00000248908
Ensembl Transcript ID: ENST00000504339
RefSeq ID: NR_037896
Location (hg38): chr5:24835280-24840583
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2290 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009619; ENST00000504339; ENST00000504339.1; RP11-730N24.1-001; OTTHUMT00000366297.1; NONHSAT100760; NR_037896; NR_037896.1
Alternative gene names: XLOC_004755; linc-CDH10-6; ENSG00000248908; RP11-730N24.1; ENSG00000248908.1; OTTHUMG00000161889.1; LINC02239; LOC340107


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0014 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02239:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH10-2:1
3.1 lnc-CDH10-2:1
4.0 lnc-CDH10-2:1
4.1 lnc-CDH10-2:1
5.0 lnc-CDH10-2:1
5.1 LINC02239:2
5.2 LINC02239:4