Transcript: lnc-CD109-2:1

Basic information

LNCipedia transcript ID: lnc-CD109-2:1 
LNCipedia gene ID: lnc-CD109-2
Ensembl Gene ID: ENSG00000224583
Ensembl Transcript ID: ENST00000421318
Location (hg38): chr6:74642384-74652002
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011326; ENST00000421318; ENST00000421318.1; RP11-554D15.4-001; OTTHUMT00000041236.1; NONHSAT113592
Alternative gene names: XLOC_005348; linc-SENP6-6; ENSG00000224583; RP11-554D15.4; ENSG00000224583.1; OTTHUMG00000015045.1; AL356277.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.3685 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD109-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD109-2:1
3.1 lnc-CD109-2:1
4.0 lnc-CD109-2:1
4.1 lnc-CD109-2:1
5.0 lnc-CD109-2:1
5.1 lnc-CYB5R4-82:1
5.2 lnc-CD109-2:1