Transcript: lnc-PTGR1-2:2

Basic information

LNCipedia transcript ID: lnc-PTGR1-2:2 
LNCipedia gene ID: lnc-PTGR1-2
RefSeq ID: NR_034087
Location (hg38): chr9:111602831-111613553
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1095 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_034087; NR_034087.1
Alternative gene names: LRRC37A5P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6622 non-coding 
CPAT coding probability 65.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTGR1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf29-2:2
4.0 lnc-C9orf29-2:2
4.1 lnc-C9orf29-2:2
5.0 lnc-C9orf29-2:2
5.1 lnc-SLC46A2-44:2
5.2 lnc-PTGR1-2:2