Transcript: lnc-IDNK-1:4

Basic information

LNCipedia transcript ID: lnc-IDNK-1:4 
LNCipedia gene ID: lnc-IDNK-1
Ensembl Gene ID: ENSG00000254473
Ensembl Transcript ID: ENST00000531661
Location (hg38): chr9:83708318-83713378
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1017 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531661.1; RP11-522I20.3-001; OTTHUMT00000388652.1
Alternative gene names: ENSG00000254473.1; RP11-522I20.3; OTTHUMG00000166241.1; AL354920.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.7235 non-coding 
CPAT coding probability 89.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IDNK-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf103-1:2
4.0 lnc-C9orf103-1:2
4.1 lnc-C9orf103-1:2
5.0 lnc-C9orf103-1:2
5.1 lnc-SECISBP2-81:5
5.2 lnc-IDNK-1:4