Transcript: lnc-PRDM9-18:4

Basic information

LNCipedia transcript ID: lnc-PRDM9-18:4 
LNCipedia gene ID: lnc-PRDM9-18
Location (hg38): chr5:24294460-24321115
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 664 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009905; NONHSAT100753
Alternative gene names: XLOC_004316; linc-CDH6-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.079 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-18:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf17-1:2
3.1 lnc-C5orf17-1:2
4.0 lnc-C5orf17-1:2
4.1 lnc-C5orf17-1:2
5.0 lnc-C5orf17-1:2
5.1 lnc-CARD6-160:4
5.2 lnc-PRDM9-18:4