Transcript: LINC02479:3

Basic information

LNCipedia transcript ID: LINC02479:3 
HGNC Gene Symbol: LINC02479    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2479
Ensembl Gene ID: ENSG00000251326
Ensembl Transcript ID: ENST00000508942
Location (hg38): chr4:130376229-130386371
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007622; ENST00000508942; ENST00000508942.1; RP11-521E5.1-001; OTTHUMT00000366028.1; NONHSAT098303
Alternative gene names: XLOC_003688; linc-PCDH10-4; ENSG00000251326; RP11-521E5.1; ENSG00000251326.1; OTTHUMG00000161766.1; LINC02479


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.8817 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02479:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf33-1:1
3.1 lnc-C4orf33-2:1
4.0 lnc-C4orf33-2:1
4.1 lnc-C4orf33-2:1
5.0 lnc-C4orf33-2:1
5.1 LINC02479:2
5.2 LINC02479:3