Transcript: lnc-SCP2D1-1:7

Basic information

LNCipedia transcript ID: lnc-SCP2D1-1:7 
LNCipedia gene ID: lnc-SCP2D1-1
Location (hg38): chr20:18794091-18795804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1290 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028117; NONHSAT078850
Alternative gene names: XLOC_013473; linc-C20orf79


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7537 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCP2D1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf79-1:2
3.1 lnc-C20orf79-1:2
4.0 lnc-C20orf79-1:2
4.1 lnc-C20orf79-1:2
5.0 lnc-C20orf79-1:2
5.1 lnc-CFAP61-13:7
5.2 lnc-SCP2D1-1:7