Transcript: lnc-C1orf185-3:1

Basic information

LNCipedia transcript ID: lnc-C1orf185-3:1 
LNCipedia gene ID: lnc-C1orf185-3
Location (hg38): chr1:51265853-51267044
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 579 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000453573.1; RP11-296A18.7-001; OTTHUMT00000022421.1; NONHSAT003192
Alternative gene names: ENSG00000230272.1; RP11-296A18.7; OTTHUMG00000008191.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5649 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1orf185-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf185-3:1
4.0 lnc-C1orf185-3:1
4.1 lnc-C1orf185-3:1
5.0 lnc-C1orf185-3:1
5.1 lnc-CDKN2C-10:1
5.2 lnc-C1orf185-3:1