Transcript: lnc-C17orf51-3:1

Basic information

LNCipedia transcript ID: lnc-C17orf51-3:1 
LNCipedia gene ID: lnc-C17orf51-3
Ensembl Gene ID: ENSG00000265043
Ensembl Transcript ID: ENST00000577309
Location (hg38): chr17:21456513-21460215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3703 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577309.1; RP11-728E14.3-001; OTTHUMT00000431348.2; NONHSAT052183
Alternative gene names: ENSG00000265043.1; RP11-728E14.3; OTTHUMG00000175986.2; AC068418.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.9996 non-coding 
CPAT coding probability 12.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf51-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf51-3:1
4.0 lnc-C17orf51-3:1
4.1 lnc-C17orf51-3:1
5.0 lnc-C17orf51-3:1
5.1 lnc-B9D1-72:1
5.2 lnc-C17orf51-3:1