Transcript: lnc-BTG3-3:1

Basic information

LNCipedia transcript ID: lnc-BTG3-3:1 
LNCipedia gene ID: lnc-BTG3-3
Ensembl Gene ID: ENSG00000232886
Ensembl Transcript ID: ENST00000430064
Location (hg38): chr21:16862875-16873691
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 377 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028873; ENST00000430064; ENST00000430064.1; AF212831.2-001; OTTHUMT00000158058.1; NONHSAT081268
Alternative gene names: XLOC_014009; linc-NRIP1-2; ENSG00000232886; AF212831.2; ENSG00000232886.1; OTTHUMG00000074395.1; AF212831.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.3695 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTG3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTG3-3:1
3.1 lnc-BTG3-3:1
4.0 lnc-BTG3-3:1
4.1 lnc-BTG3-3:1
5.0 lnc-BTG3-3:1
5.1 lnc-N6AMT1-88:1
5.2 lnc-BTG3-3:1