Transcript: lnc-BASP1-2:2

Basic information

LNCipedia transcript ID: lnc-BASP1-2:2 
LNCipedia gene ID: lnc-BASP1-2
Location (hg38): chr5:17063228-17089201
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 705 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009885; NONHSAT100617
Alternative gene names: XLOC_004306; linc-BASP1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8456 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-3:2
3.1 lnc-BASP1-2:2
4.0 lnc-BASP1-2:2
4.1 lnc-BASP1-2:2
5.0 lnc-BASP1-2:2
5.1 lnc-CARD6-193:2
5.2 lnc-BASP1-2:2