Transcript: lnc-ATP6V0D2-1:1

Basic information

LNCipedia transcript ID: lnc-ATP6V0D2-1:1 
LNCipedia gene ID: lnc-ATP6V0D2-1
Ensembl Gene ID: ENSG00000253699
Ensembl Transcript ID: ENST00000523112
Location (hg38): chr8:86180418-86212236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 501 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523112.1; CTD-3118D11.3-001; OTTHUMT00000374703.1; NONHSAT127548
Alternative gene names: ENSG00000253699.1; CTD-3118D11.3; OTTHUMG00000163662.1; AC084128.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.7308 non-coding 
CPAT coding probability 40.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP6V0D2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V0D2-1:1
4.0 lnc-ATP6V0D2-1:1
4.1 lnc-ATP6V0D2-1:1
5.0 lnc-ATP6V0D2-1:1
5.1 lnc-CA2-11:1
5.2 lnc-ATP6V0D2-1:1