Transcript: lnc-ATP2B3-4:1

Basic information

LNCipedia transcript ID: lnc-ATP2B3-4:1 
LNCipedia gene ID: lnc-ATP2B3-4
Location (hg38): chrX:153610694-153612925
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 617 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00017027; ENST00000446370; ENST00000446370.1; RP11-66N11.7-001; OTTHUMT00000060955.1; NONHSAT139082
Alternative gene names: XLOC_008089; linc-DUSP9-1; ENSG00000228616; RP11-66N11.7; ENSG00000228616.1; OTTHUMG00000024201.1; AF274858.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -384.5257 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP2B3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP2B3-2:1
3.1 lnc-ATP2B3-2:1
4.0 lnc-ATP2B3-2:1
4.1 lnc-ATP2B3-2:1
5.0 lnc-ATP2B3-2:1
5.1 lnc-MAGEA11-51:1
5.2 lnc-ATP2B3-4:1