Transcript: lnc-ALDH9A1-2:1

Basic information

LNCipedia transcript ID: lnc-ALDH9A1-2:1 
LNCipedia gene ID: lnc-ALDH9A1-2
Ensembl Gene ID: ENSG00000273365
Ensembl Transcript ID: ENST00000608512
Location (hg38): chr1:165706556-165707284
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 729 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608512.1
Alternative gene names: ENSG00000273365.1; RP11-466F5.10; AL451074.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.3654 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH9A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH9A1-2:1
4.0 lnc-ALDH9A1-2:1
4.1 lnc-ALDH9A1-2:1
5.0 lnc-ALDH9A1-2:1
5.1 lnc-SH2D1B-47:1
5.2 lnc-ALDH9A1-2:1