Transcript: lnc-LMBRD1-10:1

Basic information

LNCipedia transcript ID: lnc-LMBRD1-10:1 
LNCipedia gene ID: lnc-LMBRD1-10
Ensembl Gene ID: ENSG00000227706
Ensembl Transcript ID: ENST00000412872
Location (hg38): chr6:67887646-67889339
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1605 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147418; ENST00000412872.3
Alternative gene names: ENSG00000227706.3; RP11-301G19.1; AL713998.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8162 non-coding 
CPAT coding probability 18.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMBRD1-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL713998.1-3:1
4.0 lnc-AL713998.1-3:1
4.1 lnc-AL713998.1-3:1
5.0 lnc-AL713998.1-3:1
5.1 lnc-GSTA5-76:1
5.2 lnc-LMBRD1-10:1