Transcript: lnc-EXOSC1-1:1

Basic information

LNCipedia transcript ID: lnc-EXOSC1-1:1 
LNCipedia gene ID: lnc-EXOSC1-1
Location (hg38): chr10:97418784-97426045
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 894 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00017747
Alternative gene names: XLOC_008916; linc-RRP12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5568 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOSC1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL355490.1-1:1
3.1 lnc-AL355490.1-1:1
4.0 lnc-AL355490.1-1:1
4.1 lnc-AL355490.1-1:1
5.0 lnc-AL355490.1-1:1
5.1 lnc-CPN1-82:1
5.2 lnc-EXOSC1-1:1